Publications

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  • Bacterial-fungal interactions revealed by genome-wide analysis of bacterial mutant fitness. Emily C Pierce, Manon Morin, Jessica C Little, Roland B Liu, Joanna Tannous, Nancy P Keller, Kit Pogliano, Benjamin E Wolfe, Laura M Sanchez, Rachel J Dutton. Nature Microbiology 2021 Jan;6(1):87-102.

    doi: 10.1038/s41564-020-00800-z Link to article

  • Experimental approaches to tracking mobile genetic elements in microbial communities. Christina C Saak, Cong B Dinh, Rachel J Dutton. FEMS Microbiol Rev 2020 Sep 1;44(5):606-630. doi: 10.1093/femsre/fuaa025 Link to article

  • Changes in the genetic requirements for microbial interactions with increasing community complexity. Manon Morin, Emily C Pierce, Rachel J Dutton. eLife 2018;7:e37072. Link to article.

  • Preprint: Changes in the genetic requirements for microbial interactions with increasing community complexity. Manon Morin, Emily C Pierce, Rachel J Dutton. bioRxiv; https://doi.org/10.1101/290353. Link to article

  • Extensive horizontal gene transfer in cheese-associated bacteria. Kevin S Bonham, Benjamin E Wolfe, Rachel J Dutton. eLife 2017;6:e22144. Link to article

  • Preprint: Extensive Horizontal Gene Transfer in Cheese-Associated Bacteria. Kevin S Bonham, Benjamin E Wolfe, Rachel J Dutton. bioRxiv 079137; doi: https://doi.org/10.1101/079137 Link to article

  • Kastman EK, Kamelamela N, Norville JW, Cosetta CM, Dutton RJ, Wolfe BE. Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. mBio. 2016; 7(5). PMID: 27795388

  • From Sample to Multi-Omics Conclusions in under 48 Hours. Quinn RA, Navas-Molina JA, Hyde ER, Song SJ, et al. mSystems. 2016; 1(2) e00038–16.

  • Wang M, Carver JJ, Phelan VV, Sanchez LM, et al. Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking. Nature biotechnology. 2016; 34(8):828-37. PMID: 27504778

  • Wolfe, Benjamin E., Dutton, Rachel J. Fermented Foods as Experimentally Tractable Microbial Ecosystems. Cell. Volume 161 , Issue 1 , 49 - 55. Link to article

  • Wolfe BE*, Button JE*, Santarelli M, Dutton RJ. Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell. July 17;158,422-33. (2014) *co-first authors Link to article

  • David LA, Maurice CF, Gootenberg DB, Button JE, Ling A, Biddinger SB, Dutton RJ, Turnbaugh PJ. Diet rapidly and reproducibly alters the human gut microbiome. Nature. Jan 23;505(7484):559-63 (2014). Link to article

  • Wolfe BE, Dutton RJ. Towards an ecosystems approach to cheese microbiology. Book chapter: Cheese and Microbes. ASM Press and Microbiology Spectrum (2014)

  • Hsu CC, ElNaggar MS, Peng Y, Fang J, Sanchez LM, Mascuch SJ, Møller KA, Emad EK, Pikula J, Quinn RA, Zeng Y, Wolfe BE, Dutton RJ, Gerwick L, Zhang L, Liu X, Månsson M, Dorrestein PC. Real-time metabolomics on living microorganisms using ambient electrospray ionization flow-probe. Analytical chemistry. 85 (15), 7014-7018 (2013) Link to article

  • Dutton, RJ and Turnbaugh, PJ. Taking a metagenomic view of human nutrition. Current Opinion in Clinical Nutrition. Volume 15, Number 5, September 2012. 448-454. Link to article

  • Button, JE and Dutton, RJ. Quick Guide: Cheese Microbes. Current Biology. Volume 22, Issue 15, 7 August 2012, Pages R587–R589 Link to article